QuantifyRegion #
Quantify kmers in regions of the read. Useful to hunt for (cell) barcodes.
The regions are concatenated with a separator.
[[transform]]
action = 'QuantifyRegions'
infix = 'kmer' # output_filename is output.prefix_infix.qr.json
regions = [
{source = "Read1", start = 0, length = 6},
{source = "Read1", start = 12, length = 6},
]
separator = "-" # defaults to "_"