Cookbooks #

Complete, runnable examples demonstrating common use cases.

• 01-basic-quality-report - Cookbook 01: Basic Quality Report
• 02-umi-extraction - Cookbook 02: UMI Extraction
• 03-lexogen-quantseq - Cookbook 03: Lexogen QuantSeq Processing
• 04-phiX-removal - Cookbook 04: PhiX Removal