Cookbooks #

Complete, runnable examples demonstrating common use cases.

• 01-basic-quality-report - Cookbook 01: Basic Quality Report
• 02-umi-extraction - Cookbook 02: UMI Extraction
• 03-lexogen-quantseq - Cookbook 03: Lexogen QuantSeq Processing
• 04-phiX-removal - Cookbook 04: PhiX Removal
• 05-quality-filtering - Cookbook 05: Quality Filtering
• 06-adapter-trimming - Cookbook 06: Adapter Trimming with PolyA Tail Removal
• 07-demultiplexing - Cookbook 07: Demultiplexing by Inline Barcode
• 08-length-filtering - Cookbook 08: Read Length Filtering and Truncation