TagOtherFileBySequence #
Marks reads based on wether sequences are present in another file.
[[step]]
action = "TagOtherFileBySequence"
label = "present_in_other_file"
filename = "sequences.fastq" # fastq (also compressed), or sam/bam files
segment = "read1" # Any of your input segments
false_positive_rate = 0.01 # false positive rate (0..1)
seed = 42 # seed for randomness
This ste annotates reads by comparing their sequences against sequences from another file.