Filter Steps

Filter section #

We can filter reads using the filters listebd below.

Note the double `[[’ in [filter]], since you’re defining a list of filters.

Filters are interpreted eagerly - they’re applied as early as possible to save on computation.

All filters have an action property that controls whether we restrict to just reads matching the filter (keep_only) or remove those matching the filter( remove).

References
Secondary
Spliced
Read1 / Read2
N in UMI
UMI homopolymer
Umi All A