FAQ on fastqrab documentationhttps://tyberiusprime.github.io/fastqrab/v0.9.0/docs/faq/Recent content in FAQ on fastqrab documentationHugoen-us<link>https://tyberiusprime.github.io/fastqrab/v0.9.0/docs/faq/trouble_shooting/</link><pubDate>Mon, 01 Jan 0001 00:00:00 +0000</pubDate><guid>https://tyberiusprime.github.io/fastqrab/v0.9.0/docs/faq/trouble_shooting/</guid><description><h1 id="troubleshooting"> Troubleshooting <a class="anchor" href="#troubleshooting">#</a> </h1> <h2 id="i-dont-know-what-to-do-after-an-error-message"> I don&rsquo;t know what to do after an error message <a class="anchor" href="#i-dont-know-what-to-do-after-an-error-message">#</a> </h2> <p>Well, that&rsquo;s below our targets, we want our error messages to tell you enough for you to be able to fix it.</p> <p>Please file a bug report in our <a href="https://github.com/tyberiusPrime/fastqrab/issues">issue tracker</a>.</p> <h2 id="i-received-a-friendly-panic-message"> I received a friendly panic message <a class="anchor" href="#i-received-a-friendly-panic-message">#</a> </h2> <p>These look like this</p> <div class="highlight"><pre tabindex="0" style="color:#f8f8f2;background-color:#272822;-moz-tab-size:4;-o-tab-size:4;tab-size:4;"><code class="language-bash" data-lang="bash"><span style="display:flex;"><span>Well, this is embarrassing. </span></span><span style="display:flex;"><span> </span></span><span style="display:flex;"><span>fastqrab had a problem and crashed. To help us diagnose the problem you can send us a crash report. </span></span><span style="display:flex;"><span> </span></span><span style="display:flex;"><span>We have generated a report file at <span style="color:#e6db74">&#34;/tmp/nix-shell.ty6dWk/report-89ffc0f3-8076-4f55-83f0-c0a5d2fb3b55.toml&#34;</span>. </span></span></code></pre></div><p>This kind of error message, which wraps a rust &lsquo;panic&rsquo; only happens if fastqrab has managed to get into an impossible or unforeseen state.</p></description></item><item><title/><link>https://tyberiusprime.github.io/fastqrab/v0.9.0/docs/faq/changelog/</link><pubDate>Mon, 01 Jan 0001 00:00:00 +0000</pubDate><guid>https://tyberiusprime.github.io/fastqrab/v0.9.0/docs/faq/changelog/</guid><description><h1 id="changelog"> Changelog <a class="anchor" href="#changelog">#</a> </h1> <h2 id="v090"> v0.9.0 <a class="anchor" href="#v090">#</a> </h2> <h3 id="general"> General <a class="anchor" href="#general">#</a> </h3> <ul> <li>Renamed project from mbf-fastq-processor to fastqrab</li> <li>Much improved error messages pinpointing exactly what needs to change.</li> <li><a href="https://tyberiusprime.github.io/fastqrab/v0.9.0/fastqrab/v0.9.0/docs/concepts/tag/#virtual-tags">Virtual Tags</a> introduced</li> <li>stdout output on any (infix based) output step with &ldquo;infix=&rsquo;&ndash;stdout&ndash;'&rdquo;</li> <li>Numeric tags now support range checking</li> <li>Added <a href="https://tyberiusprime.github.io/fastqrab/v0.9.0/fastqrab/v0.9.0/docs/concepts/mascot/">Günther</a> to the docs.</li> </ul> <h3 id="new-limitations"> New limitations <a class="anchor" href="#new-limitations">#</a> </h3> <ul> <li>Segment count limited to 255</li> </ul> <h3 id="new-steps"> New steps <a class="anchor" href="#new-steps">#</a> </h3> <ul> <li> <p>New step: <a href="https://tyberiusprime.github.io/fastqrab/v0.9.0/fastqrab/v0.9.0/docs/reference/validation-steps/ValidateReadNamesPrintable/">ValidateReadNamesPrintable</a></p> </li> <li> <p>New step: <a href="https://tyberiusprime.github.io/fastqrab/v0.9.0/fastqrab/v0.9.0/docs/redirects/CompareStringTags/">CompareStringTags</a></p> </li> <li> <p>New step: <a href="https://tyberiusprime.github.io/fastqrab/v0.9.0/fastqrab/v0.9.0/docs/reference/tag-steps/using/ConcatTags/">ConcatTags</a> - concatenate multiple tags into one</p></description></item></channel></rss>