OutputReport #

Write the combined run report (JSON and/or HTML) as a pipeline step. This is the step-based equivalent of the legacy [output] report_json / report_html options. The report is assembled from every report-producing step (e.g. Report) after all steps have finalized.

At most one OutputReport step is allowed per pipeline; multiple would share the same collected report data.

[input]
    read1 = "input.fq"

[[step]]
    action = "Report"
    name = "my_report"
    count = true

[[step]]
    action = "OutputReport"
    json = true    # write {prefix}.json
    html = false   # write {prefix}.html

[output]
    prefix = "output"

{prefix}.json and {prefix}.html are written next to the other outputs.